[CD 1]
01. Main Title
(PART I)
02. Erasmus
03. Reef
04. Wakening in the Japans
05. In the Village
06. Yabu's Arrival
07. One of You Is to Die
08. I'm Not the One to Go
09. Boiling Torture
10. A Slave Ship
11. Do It, Ingles
12. Men Make Mistakes
13. After the Rescue
14. I Got Drunk Last Night
15. Naga
16. On the Way to Meet Toranaga
17. Sent to Prison
18. In the Cellblock
19. Anjin-San
(PART II)
20. Put Them On
21. Blackthorne and Mariko
22. Alvito
23. Something Unexpected
24. Amida Tong
25. Kasiji Yabuka
26. You Will Burn in Hell*
27. A Big-Hatted Person
28. Ishido's Letter*
29. A Honeyed Tongue
30. The Ambush
31. To the Galley!
32. An Easy Target
33. Come Aboard
34. A Nice Deal
35. Coming Back to Anjiro
36. Only Japanese Ways
37. End Credits (alternate)

[CD 2]
01. Mariko's Theme
(PART III)
02. Challenging Omi
03. Seppuku
04. Tonight
05. Training
06. Nocturne
07. Confrontation
08. Wife Beating
09. Please Don't Do This
10. Punishment
11. Elegy
12. Earthquake
13. A Casualty
14. Toranaga's Camp
15. Samurai
(PART IV)
16. Kiku
17. To Yedo
18. Before the Ceremony
19. Tea Ceremony
20. Swear to Me
21. Unhappy Lovers
22. Learning Japanese
23. Kinjiru
(PART V)
24. Blackthorne and Fujiko
25. Samurai's Oath
26. Erasmus Towed
27. Preparing for Mariko's Suicide
28. Yabu Trapped
29. Yabu's Betrayal
30. Yabu and Ninja
31. Mariko's Funeral
32. Christian Samurai
33. Vinck's Madness
34. Mariko
35. Finale
36. End Credits

[CD 3]
(THE ALBUM)
01. Shogun
02. The Japans
03. Tea and Jealousy
04. Nocturne
05. Toranaga
06. To the Galley!
07. Mariko
08. Ceremonial
09. Despair and Madness
10. Anjiro
11. Blackthorne
12. Escape From Osaka*
13. Finale
(THE EXTRAS)
14. Bumpers
15. Wakening in the Japans
16. Decapitation
17. Blackthorne Taken in the Pit
18. The Shortest Straw
19. Pieterzoon's Death
20. After the Night of Screams
21. Cleaning Humiliation
22. A Good Bath
23. Kiku-San
24. Do It, Ingles
25. Do It, Ingles
26. Do It, Ingles
27. Blackthorne at the Wheel
28. So I Owe You My Life, Ingles
29. I Got Drunk Last Night
30. Blackthorne Obeys Naga
31. Sake to Me
32. Stripped
33. Put Them On
34. Moon Over Osaka
35. Melancholy Shamisen and Shakuhachi
36. Shamisen Source
37. Tono
38. Blackthorne's Dance
39. You Will Burn in Hell
40. You Will Burn in Hell
41. Night March
42. To the Galley!
43. Any Closer, And…
44. Now!
45. Elegy
46. To Yedo II
47. An Empty Cup